| Species | Name | Family | Habitat | Length (cm) | Trophic Level | Status |
|---|---|---|---|---|---|---|
| Afronemacheilus abyssinicus | Nemacheilidae | benthopelagic | 5.1 SL | 2.8 | misidentification | |
| Afronemacheilus kaffa | Nemacheilidae | benthopelagic | 5.5 SL | 2.8 | endemic | |
| Alestes baremoze | Silversides | Alestidae | benthopelagic | 43.0 TL | 3.0 | native |
| Alestes dentex | Characin | Alestidae | pelagic | 55.0 TL | 2.9 | native |
| Andersonia leptura | Amphiliidae | demersal | 4.6 SL | 3.0 | native | |
| Auchenoglanis biscutatus | Auchenoglanididae | demersal | 54.0 SL | 3.1 | native | |
| Auchenoglanis occidentalis | Bubu | Auchenoglanididae | demersal | 70.0 SL | 2.9 | native |
| Bagrus bajad | Bayad | Bagridae | demersal | 112.0 FL | 4.0 | native |
| Bagrus docmak | Semutundu | Bagridae | benthopelagic | 127.0 TL | 4.1 | native |
| Brachyalestes ferox | Large-toothed Lake Turkana robber | Alestidae | pelagic | 8.1 SL | 3.2 | endemic |
| Brachyalestes minutus | Dwarf Lake Turkana robber | Alestidae | pelagic | 3.3 SL | 3.1 | endemic |
| Brachyalestes nurse | Nurse tetra | Alestidae | pelagic | 25.4 TL | 2.5 | native |
| Brycinus macrolepidotus | True big-scale tetra | Alestidae | pelagic | 53.0 SL | 2.8 | native |
| Chelaethiops bibie | Lake Turkana sardine | Danionidae | demersal | 5.5 TL | 2.3 | native |
| Chiloglanis kerioensis | Mochokidae | benthopelagic | 4.0 SL | 3.1 | endemic | |
| Chrysichthys auratus | Golden Nile catfish | Claroteidae | demersal | 57.0 TL | 3.7 | misidentification |
| Chrysichthys turkana | Claroteidae | demersal | 9.3 SL | 3.2 | endemic | |
| Citharinus citharus | Moon fish | Citharinidae | demersal | 58.0 SL | 2.0 | native |
| Clarias gariepinus | North African catfish | Clariidae | benthopelagic | 170.0 TL | 3.8 | native |
| Coptodon zillii | Redbelly tilapia | Cichlidae | benthopelagic | 40.0 SL | 2.5 | introduced |
| Distichodus nefasch | Distichodontidae | pelagic | 83.0 TL | 2.0 | native | |
| Enteromius neumayeri | Neumayer's barb | Cyprinidae | benthopelagic | 11.8 SL | 3.0 | native |
| Enteromius paludinosus | Straightfin barb | Cyprinidae | benthopelagic | 15.0 SL | 2.9 | native |
| Enteromius stigmatopygus | Cyprinidae | benthopelagic | 2.8 SL | 3.0 | native | |
| Enteromius turkanae | Lake Turkana barb | Cyprinidae | pelagic | 4.2 SL | 3.0 | endemic |
| Eremodon cochleari | Pantanodontidae | benthopelagic | 2.3 SL | 3.0 | native | |
| Eremodon jeanneli | Omo lampeye | Pantanodontidae | benthopelagic | 3.5 TL | 3.1 | endemic |
| Eremodon kifuani | Pantanodontidae | benthopelagic | 2.0 SL | 3.0 | native | |
| Garra chebera | Cyprinidae | benthopelagic | 7.5 SL | 2.2 | endemic | |
| Garra dembeensis | Dembea stone lapper | Cyprinidae | benthopelagic | 11.0 SL | 2.0 | native |
| Garra makiensis | Cyprinidae | benthopelagic | 13.5 SL | 2.0 | native | |
| Gymnarchus niloticus | Aba | Gymnarchidae | demersal | 167.0 SL | 3.7 | native |
| Haplochromis macconneli | Cichlidae | benthopelagic | 7.7 SL | 3.3 | native | |
| Haplochromis rudolfianus | Cichlidae | benthopelagic | 5.8 SL | 3.2 | native | |
| Haplochromis turkanae | Turkana haplo | Cichlidae | benthopelagic | 8.6 SL | 3.5 | native |
| Heterobranchus longifilis | Sampa | Clariidae | demersal | 150.0 SL | 3.7 | native |
| Heterotis niloticus | African bonytongue | Arapaimidae | pelagic | 100.0 SL | 2.7 | native |
| Hydrocynus forskahlii | Elongate tigerfish | Alestidae | pelagic | 78.0 SL | 4.0 | native |
| Hydrocynus vittatus | Tiger fish | Alestidae | demersal | 105.0 FL | 3.7 | native |
| Hyperopisus bebe | Mormyridae | demersal | 51.0 SL | 3.6 | native | |
| Labeo cylindricus | Redeye labeo | Cyprinidae | benthopelagic | 25.0 SL | 2.0 | native |
| Labeo horie | Cyprinidae | benthopelagic | 57.0 TL | 2.1 | native | |
| Labeo niloticus | Nile labeo | Cyprinidae | benthopelagic | 63.0 TL | 2.5 | native |
| Labeobarbus bynni | Niger barb | Cyprinidae | benthopelagic | 82.0 TL | 3.1 | native |
| Labeobarbus intermedius | Cyprinidae | benthopelagic | 48.9 SL | 3.2 | native | |
| Lates longispinis | Rudolf lates | Latidae | demersal | 57.0 TL | 4.1 | endemic |
| Lates niloticus | Nile perch | Latidae | demersal | 200.0 TL | 4.5 | native |
| Leptocypris niloticus | Danionidae | demersal | 10.8 TL | 3.3 | native | |
| Malapterurus electricus | Electric catfish | Malapteruridae | benthopelagic | 122.0 SL | 2.9 | native |
| Malapterurus minjiriya | Malapteruridae | benthopelagic | 51.0 SL | 3.5 | native | |
| Micralestes acutidens | Sharptooth tetra | Alestidae | pelagic | 9.0 SL | 2.9 | misidentification |
| Micralestes elongatus | Elongated Turkana robber | Alestidae | pelagic | 6.0 TL | 3.3 | native |
| Micropanchax rudolfianus | Lake Rudolf lampeye | Procatopodidae | benthopelagic | 3.0 TL | 3.1 | endemic |
| Mochokus niloticus | Mochokidae | demersal | 6.5 TL | 2.9 | native | |
| Mormyrus kannume | Elephant-snout fish | Mormyridae | demersal | 100.0 SL | 3.2 | native |
| Neobola bottegoi | Danionidae | benthopelagic | 7.3 TL | 3.2 | native | |
| Neobola stellae | Danionidae | benthopelagic | 2.3 TL | 3.0 | endemic | |
| Oreochromis niloticus | Nile tilapia | Cichlidae | benthopelagic | 60.0 SL | 2.0 | native |
| Polypterus bichir | Nile bichir | Polypteridae | demersal | 74.0 TL | 4.5 | native |
| Polypterus senegalus | Gray bichir | Polypteridae | demersal | 70.0 SL | 3.5 | native |
| Protopterus aethiopicus | Marbled lungfish | Protopteridae | demersal | 200.0 TL | 4.4 | native |
| Raiamas senegalensis | Senegal minnow | Danionidae | benthopelagic | 24.5 TL | 3.4 | native |
| Rubricatochromis exsul | Turkana jewel cichlid | Cichlidae | benthopelagic | 10.0 SL | 3.4 | endemic |
| Rubricatochromis letourneuxi | Jewel fish | Cichlidae | benthopelagic | 11.9 SL | 3.0 | native |
| Sarotherodon galilaeus | Mango tilapia | Cichlidae | demersal | 39.5 TL | 2.8 | native |
| Schilbe intermedius | Silver catfish | Schilbeidae | pelagic | 50.0 SL | 3.6 | misidentification |
| Schilbe uranoscopus | Schilbeidae | demersal | 36.0 SL | 3.4 | native | |
| Synodontis frontosus | Mochokidae | benthopelagic | 34.2 TL | 2.8 | native | |
| Synodontis schall | Wahrindi | Mochokidae | benthopelagic | 40.0 TL | 2.9 | native |
| Tetraodon lineatus | Globe fish | Tetraodontidae | demersal | 43.0 TL | 3.6 | native |