| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 3109 |
| Andaman Sea | Sea/Bay/Gulf | native | 37773 |
| Arabian Sea | Sea/Bay/Gulf | native | 3109 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 28 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Brooke's Point | Sea/Bay/Gulf | native | 114805 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Chilika Lake/Lagoon | Lagoon | native | 95460 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2334 |
| Davao Gulf | Sea/Bay/Gulf | native | 126188 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 2334 |
| Gulf of Aden | Sea/Bay/Gulf | native | 3109 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 3109 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 9770 |
| Indian Ocean | Sea/Bay/Gulf | native | 28 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2334 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 3109 |
| Ragay Gulf | Sea/Bay/Gulf | native | 38601 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45674 |
| Shark Bay | Sea/Bay/Gulf | native | 115274 |
| Sofronio Española | Sea/Bay/Gulf | native | 114805 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3109 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 393 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115274 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |