| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Arabian Sea | Sea/Bay/Gulf | native | 2872 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 7300 |
| Bay of Bengal | Sea/Bay/Gulf | native | 3280 |
| Chilika Lake/Lagoon | Lagoon | native | 95460 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Erhjen River | River (basin) | native | 36073 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5450 |
| Gulf of Oman | Sea/Bay/Gulf | native | 47533 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3280 |
| Indian Ocean | Sea/Bay/Gulf | native | 7300 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3280 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Malacca Strait | Sea/Bay/Gulf | native | 121464 |
| New Zealand Shelf | Sea/Bay/Gulf | native | 3280 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 47533 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Ruerhmen River | River (basin) | native | 36073 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45161 |
| Sikao Creek | River (basin) | native | 52823 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3287 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 2858 |
| Verde Island Passage | Sea/Bay/Gulf | native | 107853 |