| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Aruwimi | River (basin) | native | 106290 |
| Congo | River (basin) | endemic | 83752 |
| Ethiopian | Zoogeographic realm | endemic | 3203 |
| Kasai | River (basin) | native | 83752 |
| Lower Congo | River (basin) | native | 83752 |
| Lualaba | River (basin) | native | 106245 |
| Mai-Ndombe | Lake | native | 83752 |
| Middle Congo | River (basin) | native | 83752 |
| Ubangui | River (basin) | native | 83752 |
| Uélé | River (basin) | native | 83752 |
| Wagenia Falls | River (basin) | native | 106245 |