| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Chiku River | River (basin) | native | 36073 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 4959 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Erh-jen-shi | Sea/Bay/Gulf | native | 43515 |
| Erhjen River | River (basin) | native | 36073 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 4335 |
| Kaoping River | River (basin) | native | 36073 |
| Pacific Ocean | Sea/Bay/Gulf | native | 86288 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Ruerhmen River | River (basin) | native | 36073 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| Shiliao River | River (basin) | native | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Tsengwen River | River (basin) | native | 36073 |
| Tung-hsiao | Sea/Bay/Gulf | native | 43510 |