| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Arabian Sea | Sea/Bay/Gulf | native | 2872 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 11441 |
| Bay of Bengal | Sea/Bay/Gulf | native | 45255 |
| Calauag Bay | Sea/Bay/Gulf | native | 47571 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Indian Ocean | Sea/Bay/Gulf | native | 11441 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| Northern Bay of Bengal | Sea/Bay/Gulf | native | 115104 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 28618 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 11441 |
| Ragay Gulf | Sea/Bay/Gulf | native | 38601 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| Sea of Japan/East Sea | Sea/Bay/Gulf | native | 97647 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3300 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 393 |
| Yellow Sea | Sea/Bay/Gulf | native | 12711 |