| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 529 |
| Andaman Sea | Sea/Bay/Gulf | native | 90102 |
| Central and Southern Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 529 |
| Exmouth to Broome | Sea/Bay/Gulf | native | 75154 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 529 |
| Indian Ocean | Sea/Bay/Gulf | native | 529 |
| Indonesian Sea | Sea/Bay/Gulf | native | 529 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 529 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 529 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 529 |
| Pacific Ocean | Sea/Bay/Gulf | native | 28618 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 529 |