| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5485 |
| Andaman and Nicobar Islands | Sea/Bay/Gulf | native | 118627 |
| Arabian Sea | Sea/Bay/Gulf | native | 2872 |
| Bay of Bengal | Sea/Bay/Gulf | native | 118627 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Erh-jen-shi | Sea/Bay/Gulf | native | 43515 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 47533 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 244 |
| Indian Ocean | Sea/Bay/Gulf | native | 244 |
| Indonesian Sea | Sea/Bay/Gulf | native | 244 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| Manila Bay | Sea/Bay/Gulf | native | 288 |
| North Australian Shelf | Sea/Bay/Gulf | native | 6390 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 6390 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 6390 |
| Pacific Ocean | Sea/Bay/Gulf | native | 244 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 244 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 244 |
| Tañon Strait | Sea/Bay/Gulf | native | 47737 |
| Tung-hsiao | Sea/Bay/Gulf | native | 43510 |
| Visayan Sea | Sea/Bay/Gulf | native | 47736 |
| West Philippine Sea | Sea/Bay/Gulf | native | 288 |
| Yellow Sea | Sea/Bay/Gulf | native | 244 |