| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2909 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 1602 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2909 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2909 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2909 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2909 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| South China Sea | Sea/Bay/Gulf | questionable | 36648 |
| Taal Lake | Lake | native | 12165 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |