| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Aruwimi | River (basin) | native | 106290 |
| Bandama | River (basin) | native | 81282 |
| Benue | River (basin) | native | 81282 |
| Bia | River (basin) | native | 81282 |
| Bomu | River (basin) | native | 26192 |
| Boubo | River (basin) | native | 81282 |
| Cavally | River (basin) | native | 81282 |
| Cess | River (basin) | native | 81282 |
| Chad | River (basin) | native | 81282 |
| Comoé | River (basin) | native | 81282 |
| Congo | River (basin) | native | 2940 |
| Corubal | River (basin) | native | 81282 |
| Cross | River (basin) | native | 81282 |
| Cuanza | River (basin) | questionable | 120641 |
| Ethiopian | Zoogeographic realm | endemic | 2940 |
| Gambia | River (basin) | native | 81282 |
| Great Scarcies | River (basin) | native | 81282 |
| Itimbiri | River (basin) | native | 106290 |
| Kasai | River (basin) | native | 26192 |
| Konkouré | River (basin) | native | 81282 |
| Kotto | River (basin) | native | 26192 |
| Kwango | River (basin) | native | 26192 |
| Lindi-Tshopo | River (basin) | native | 106290 |
| Little Scarcies | River (basin) | native | 81282 |
| Lofa | River (basin) | native | 81282 |
| Lualaba | River (basin) | native | 45434 |
| Middle Congo | River (basin) | native | 26192 |
| Moa | River (basin) | native | 81282 |
| Mongala | River (basin) | native | 26192 |
| Mono | River (basin) | native | 81282 |
| Niger | River (basin) | native | 81282 |
| Nile | River (basin) | native | 4906 |
| Ogun | River (basin) | native | 81282 |
| Ouémé | River (basin) | native | 81282 |
| Pampana | River (basin) | native | 81282 |
| Pool Malebo | Lake | native | 26192 |
| Pra | River (basin) | native | 81282 |
| Rokel | River (basin) | native | 81282 |
| Ruki | River (basin) | native | 26192 |
| Sahara | River (basin) | native | 112399 |
| Sanaga | River (basin) | native | 51193 |
| Sangha | River (basin) | native | 26192 |
| Sankuru | River (basin) | native | 26192 |
| Sassandra | River (basin) | native | 81282 |
| Senegal | River (basin) | native | 81282 |
| Sewa | River (basin) | native | 13331 |
| Tano | River (basin) | native | 13331 |
| Ubangui | River (basin) | native | 26192 |
| Uélé | River (basin) | native | 26192 |
| Upper Lualaba | River (basin) | native | 45434 |
| Volta | River (basin) | native | 81282 |
| Wagenia Falls | River (basin) | native | 106245 |