| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agnébi | River (basin) | native | 13331 |
| Bandama | River (basin) | native | 81282 |
| Benue | River (basin) | native | 81282 |
| Chad | River (basin) | native | 81282 |
| Comoé | River (basin) | native | 81282 |
| Congo | River (basin) | native | 12818 |
| Corubal | River (basin) | native | 81282 |
| Ethiopian | Zoogeographic realm | endemic | 2801 |
| Fatala | River (basin) | native | 81282 |
| Gambia | River (basin) | native | 81282 |
| Géba | River (basin) | native | 81282 |
| Great Scarcies | River (basin) | native | 81282 |
| Kogon | River (basin) | native | 81282 |
| Konkouré | River (basin) | native | 81282 |
| Kotto | River (basin) | native | 12818 |
| Lofa | River (basin) | native | 13331 |
| Moa | River (basin) | native | 13331 |
| Mono | River (basin) | native | 81282 |
| Niger | River (basin) | native | 81282 |
| Nile | River (basin) | native | 120561 |
| Ouémé | River (basin) | native | 81282 |
| Pampana | River (basin) | native | 81282 |
| Pra | River (basin) | native | 81282 |
| Sahara | River (basin) | native | 112399 |
| Saint Paul | River (basin) | native | 13331 |
| San Pedro | River (basin) | native | 81282 |
| Sassandra | River (basin) | native | 81282 |
| Senegal | River (basin) | native | 81282 |
| Sewa | River (basin) | native | 13331 |
| Volta | River (basin) | native | 81282 |
| White Nile | River (basin) | native | 120561 |