| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 4233 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 1602 |
| Bay of Bengal | Sea/Bay/Gulf | native | 4233 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| Chilika Lake/Lagoon | Lagoon | native | 95460 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 7300 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Davao Gulf | Sea/Bay/Gulf | native | 126188 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 1602 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 4233 |
| Honda Bay | Sea/Bay/Gulf | native | 71000 |
| Iberian Coastal | Sea/Bay/Gulf | native | 4233 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 4233 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 4233 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Leyte Gulf | Sea/Bay/Gulf | native | 68980 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 45808 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 38544 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 4233 |
| Polynesian Waters | Sea/Bay/Gulf | native | 4233 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Sogod Bay | Sea/Bay/Gulf | native | 31411 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| South West Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 280 |
| Tahiti I. | Sea/Bay/Gulf | native | 4233 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Yellow Sea | Sea/Bay/Gulf | native | 4233 |