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| No. | Valid Name | Author | English Name |
| 1. | Stigmatogobius borneensis | (Bleeker, 1850) | |
| 2. | Stigmatogobius elegans | Larson, 2005 | |
| 3. | Stigmatogobius pleurostigma | (Bleeker, 1849) | |
| 4. | Stigmatogobius sadanundio | (Hamilton, 1822) | |
| 5. | Stigmatogobius sella | (Steindachner, 1881) | |
| 6. | Stigmatogobius signifer | Larson, 2005 |