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| No. | Valid Name | Author | English Name |
| 1. | Gobiopterus birtwistlei | (Herre, 1935) | |
| 2. | Gobiopterus brachypterus | (Bleeker, 1855) | |
| 3. | Gobiopterus chuno | (Hamilton, 1822) | |
| 4. | Gobiopterus lacustris | (Herre, 1927) | Lacustrine goby |
| 5. | Gobiopterus macrolepis | Cheng, 1965 | |
| 6. | Gobiopterus mindanensis | (Herre, 1944) | Mindanao glassgoby |
| 7. | Gobiopterus panayensis | (Herre, 1944) | |
| 8. | Gobiopterus semivestitus | (Munro, 1949) | Glassgoby |
| 9. | Gobiopterus smithi | (Menon & Talwar, 1973) | |
| 10. | Gobiopterus stellatus | (Herre, 1927) | Dwarf freshwater goby |